PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G015000.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family AP2
Protein Properties Length: 197aa    MW: 21316 Da    PI: 10.4407
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G015000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.5e-18109158155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Sobic.010G015000.2.p 109 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 158
                           78*******************......55************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.47E-16109166IPR016177DNA-binding domain
PfamPF008475.5E-10109158IPR001471AP2/ERF domain
PROSITE profilePS5103217.556110166IPR001471AP2/ERF domain
SMARTSM003801.5E-28110172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-17110166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MVLDLNVASP ADSGTSSSSV LNSADGGFRF GLLGSPVDDD DCSGEMAPGA STGFMTRQLF  60
PSPTPPAEPE PPAAPVPVWQ PRRAEDLGAA QRPVAPAKKT RRGPRSRSSQ YRGVTFYRRT  120
GRWESHIWDC GKQVYLGGFD TAHAAARAYD RAAIKFRGLE ADINFRFARG SSKYRGVTLH  180
KCGRWEARMG QLLGKK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278380.0KJ727838.1 Zea mays clone pUT5791 AP2-EREBP transcription factor (EREB11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437734.11e-118hypothetical protein SORBIDRAFT_10g001490
SwissprotP479275e-43AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLC5Z2W41e-118C5Z2W4_SORBI; Putative uncharacterized protein Sb10g001490
STRINGSb10g001490.11e-117(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.25e-43AP2 family protein